Save Bioconductor Objects To File


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Documentation for package ‘alabaster.base’ version 1.6.1

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A C H I L M P Q R S T V W misc

-- A --

acquireFile Acquire file or metadata
acquireFile-method Acquire file or metadata
acquireMetadata Acquire file or metadata
acquireMetadata-method Acquire file or metadata
addMissingPlaceholderAttributeForHdf5 Choose a missing value placeholder
altLoadObject Alter the reading function
altLoadObjectFunction Alter the reading function
altReadObject Alter the reading function
altReadObjectFunction Alter the reading function
altSaveObject Alter the saving generic
altSaveObjectFunction Alter the saving generic
altStageObject Alter the saving generic
altStageObjectFunction Alter the saving generic
anyMissing Find missing values
as.character.Rfc3339 Representing Internet date/times
as.POSIXct.Rfc3339 Representing Internet date/times
as.POSIXlt.Rfc3339 Representing Internet date/times
as.Rfc3339 Representing Internet date/times
as.Rfc3339.character Representing Internet date/times
as.Rfc3339.default Representing Internet date/times
as.Rfc3339.POSIXt Representing Internet date/times

-- C --

c.Rfc3339 Representing Internet date/times
checkValidDirectory Validate a directory of objects
chooseMissingPlaceholderForHdf5 Choose a missing value placeholder
createRedirection Create a redirection file
customloadObjectHelper Read an object from disk

-- H --

h5_cast HDF5 utilities
h5_create_vector HDF5 utilities
h5_guess_vector_chunks HDF5 utilities
h5_object_exists HDF5 utilities
h5_read_attribute HDF5 utilities
h5_read_vector HDF5 utilities
h5_write_attribute HDF5 utilities
h5_write_vector HDF5 utilities
hdf5 HDF5 utilities

-- I --

is.missing Find missing values
is.Rfc3339 Representing Internet date/times

-- L --

listDirectory List objects in a directory
listLocalObjects List objects in a directory
listObjects List objects in a directory
loadAtomicVector Read an atomic vector from disk
loadBaseFactor Read a factor from disk
loadBaseList Read a base list from disk
loadDataFrame Read a DataFrame from disk
loadDataFrameFactor Read a DataFrame factor from disk
loadDirectory Load all non-child objects in a directory
loadObject Read an object from disk

-- M --

missingPlaceholderName Choose a missing value placeholder
moveObject Move a non-child object in the staging directory

-- P --

processMcols Save R-level metadata to disk
processMetadata Save R-level metadata to disk

-- Q --

quickLoadObject Convenience helpers for handling local directories
quickReadCsv Quickly read and write a CSV file
quickStageObject Convenience helpers for handling local directories
quickWriteCsv Quickly read and write a CSV file

-- R --

readAtomicVector Read an atomic vector from disk
readBaseFactor Read a factor from disk
readBaseList Read a base list from disk
readDataFrame Read a DataFrame from disk
readDataFrameFactor Read a DataFrame factor from disk
readLocalObject Convenience helpers for handling local directories
readMetadata Read R-level metadata
readObject Read an object from disk
readObjectFile Utilities to read and save the object file
readObjectFunctionRegistry Read an object from disk
registerReadObjectFunction Read an object from disk
registerValidateObjectDerivedFrom Validate an object's on-disk representation
registerValidateObjectDimensionsFunction Validate an object's on-disk representation
registerValidateObjectFunction Validate an object's on-disk representation
registerValidateObjectHeightFunction Validate an object's on-disk representation
registerValidateObjectSatisfiesInterface Validate an object's on-disk representation
removeObject Remove a non-child object from the staging directory
restoreMetadata Read R-level metadata
Rfc3339 Representing Internet date/times

-- S --

saveAtomicVector Save atomic vectors to disk
saveBaseFactor Save a factor to disk
saveBaseList Save a base list to disk
saveBaseListFormat Save a base list to disk
saveDataFrameFormat Choose the format for certain objects
saveFormats Choose the format for certain objects
saveLocalObject Convenience helpers for handling local directories
saveMetadata Save R-level metadata to disk
saveObject Save objects to disk
saveObject-method Representing Internet date/times
saveObject-method Save atomic vectors to disk
saveObject-method Save a factor to disk
saveObject-method Save a base list to disk
saveObject-method Stage a DataFrameFactor object
saveObject-method Save a DataFrame to disk
saveObjectFile Utilities to read and save the object file
schemaLocations Read an object from disk
searchForMethods Save objects to disk
stageObject Save objects to disk
stageObject-method Save atomic vectors to disk
stageObject-method Save a factor to disk
stageObject-method Save a base list to disk
stageObject-method Stage a DataFrameFactor object
stageObject-method Save objects to disk
stageObject-method Save a DataFrame to disk

-- T --

transformVectorForHdf5 Transform a vector to save in a HDF5 file

-- V --

validateDirectory Validate a directory of objects
validateObject Validate an object's on-disk representation

-- W --

writeMetadata Saving the metadata

-- misc --

.addMissingStringPlaceholderAttribute Choose a missing value placeholder
.altLoadObject Alter the reading function
.altStageObject Alter the saving generic
.chooseMissingStringPlaceholder Choose a missing value placeholder
.createRedirection Create a redirection file
.loadObject Alter the reading function
.loadObjectInternal Read an object from disk
.processMcols Save R-level metadata to disk
.processMetadata Save R-level metadata to disk
.quickReadCsv Quickly read and write a CSV file
.quickWriteCsv Quickly read and write a CSV file
.restoreMetadata Read R-level metadata
.saveBaseListFormat Save a base list to disk
.saveDataFrameFormat Choose the format for certain objects
.searchForMethods Save objects to disk
.stageObject Alter the saving generic
.writeMetadata Saving the metadata
[.Rfc3339 Representing Internet date/times
[<-.Rfc3339 Representing Internet date/times
[[.Rfc3339 Representing Internet date/times
[[<-.Rfc3339 Representing Internet date/times